I know its been a while since I've updated, you may want to reread things as to not be confused, or just look at the summary at the end of the last chapter. Just an FYI Lilian Luthor will be referred to as Alex, I'm writing as if Kara thinks she is Alex

Kara woke up at the DEO, it had been a week since her rescue, but her powers still had not come back. She figured something must be wrong with the sun bed, or that she was just very tired since she blew out her powers to save Mon-EL.

Before she could think too much into it Alex walked into her room.

"How you feeling? Any powers yet?" The older sister asked

"No nothing just yet. I guess not being exposed to the sun and losing all that blood I'm just taking longer to recover."

"We will work on getting the sun lamps higher so you can heal faster." Alex said, her voice laced with concern.

"How is Mon-El?"

"He got out of here about a week ago, he seems to be perfectly fine, just worry about yourself."

"Thanks Alex." After a moment of awkward silence Kara decided to speak up, "How have you been with this whole thing?"

"It has been tough, but I have been managing, although it has been hard to keep your cover of being out at work."

At this Kara shot up, "Oh my god is going to kill me, what am I going to do?"

"Relax Supergirl, I think your boss can manage without you." When Alex saw her sister was not comforted she added "Hey it won't be that much longer, you'll be back in no time."

"Catco can't survive too long without Kara Danvers." The younger sister joked

"Why don't you get some sleep, I'll work on the sunbed so you can get out of here. I love you Kara."

"I love you too Alex."

Kara laid back down on her bed and closed her eyes to a peaceful sleep.

Alex walked out of the room and down the hallway into her office, she opened up her laptop and started on her report

Day 60:

Subject 382, Supergirl has reviled her secret identity to be Kara Danvers, research we have previously collected backs this statement. Additionally, Ms. Danvers has supplied us with the information for us to infer her sister must be Alex Danvers.

The other subject, 381, Mon-El has been given back to the DEO, he will hopefully increase the instability of the organization while providing them with the information that he does not know any status on Supergirl. We hope this will make the DEO believe their hero is gone, and when she attacks the city they will be unprepared.

We are going to actually turn on the sunbed for Subject 382 to heal, she is fully convinced that we are her friends, we need to test that the DEO is her enemy. We will send her out later today, if she has fully healed. We are confident that if the subject does not listen we can used to chip in her head to render her unconscious and we can continue to preform more experiments.

Alex is playing pool with Maggie when she gets a text form J'onn that Mon-El has just limped into the DEO.

Maggie looks up to see Alex's face full of hope and sadness

Alex quickly texts back, 'Kara too?'

Alex spends the next couple of minutes eager to get the next text, but when she does she wishes she hadn't

'Nothing on her yet, Mon-El is getting treatment right now, come in and we can question him on the whereabouts of Supergirl' Alex pockets her phone and looks at Maggie sympathetically

"Uh Maggie I'm sorry I have to go, someone who was kidnapped just landed on our doorsteps."

"Say no more Danver, the FBI must always have something."

"I'm sorry, drinks on me next time I promise"

"I'm holding you to that."

With that Alex grabbed her coat and rushed out the door. She parked her bike in the basement lot and walked into the infirmary.

"How is he?" She asked when she saw J'onn outside his room

"He seems to be okay, the only thing is a gunshot wound to his leg, but it seems to have some treatment to it."

"Treatment?"

"Apparently Cadmus knew of his lead allergy and they took the bullet out to stop the infection, but they didn't treat him besides that."

"Why would they treat him at all?"

"I haven't figured that part out yet, let's see if he has anything that can help us."

The pair walks into the room each going to a side of the bed Mon-El is situated on

"How are you feeling?" The martian asks

"My head is a little fuzzy, and my knee hurts. How's Kara?"

"What do you mean?" The older Danvers chimes in

"Well Cadmus told me that they got rid of her a week ago, I figured they let her go and you guys had her...Based on your faces I'm guessing that isn't the case though."

"No, there has been no word on Supergirl, not since she was taken."

Alex can hear the conversation around her continue, but her mind has gone blank, her skin pale, and her hands begin to shake.

"Excuse me" She says in barley over a whisper. She knows she should be professional about the situation, but she cannot think straight.

Her head is down for so long she does not notice she has bumped into someone.

"Where's the fire Alex?" Alex looks up to see Lucy

Lucy's smile fades when she sees the state her friend is in

"Alex what's wrong?" Alex collapses in her friends arms "Hey lets go for a walk," she takes Alex's face in her hands "okay, it's going to be okay."

"I have to say I was curious as to why the Queen of Media scheduled an appointment with me." Lena says as walked into her office

"I don't have time to beat around the bush. How long have you known that Kara is Supergirl?" Lena was thrown about by the question

"How long have you known?"

"Oh please, I've known from the beginning, the girl can't lie to save herself."

"Tell me about it, one time she told me she flew here on a bus."

"Enough of that though, I think she is in trouble."

"Why do you think that?"

"She has been missing for months now, and I started to get curious on what 'case' she was on the jury for, so I had some people who owe me a favor look into it, and there are no cases. There are also no hotels being booked for juries to stay at in the area, and nothing to support the idea that anything like that is happening."

"Well maybe she just went on a vacation or something?"

"Kara Danvers, vacation, while leaving National City defensiveness, I don't think so."

"Yeah, call me hopeful."

"So anyway, I looked into it and I had someone follow her sister, which by the way is extremely hard, even in her state of fear and pain, she is very guarded. I had to pay top dollar for a good agent to follow her, but I was able to find out that the sister has been in the office more, and is drinking more. Which makes me think the only thing that can break that agent was if something were to happen to her sister."

Lena tries to take in all the information.

"So that brings me to the question, will you help me investigate to bring Kara Danvers home?"

After about an hour Alex finally starts to speak

"Mon-El came in today, an- and he" She chokes out in a sob

"Hey take your time Alex it's okay" Lucy says running a soothing hand up her back

"He said that Kara is dead" She can hold herself any longer, her knees give out and she falls in a heap at her friends feet.

Lucy follows her to the ground and engulfs her in a hug

"He said she's dead?"

"he said that they got rid of her a week ago, and she's not with us, that can't mean anything else."

"Alex you don't know that."

"What else could it possibly mean Lucy!" Alex says with rage in her eyes, "she's de-" Alex is cut off by an explosion a block away from her.

She straightens her back while Lucy helps her up.

"What was that?"

"J'onn told me earlier they had a raid prepared for one of the warehouses near here."

"Are you okay enough to check it out?" Lucy inquired

"Yeah, lets go" Alex says already running down the block toward the sounds of gunfire and screams

She comes to a stop when she gets to the deserted land, her eyes must be lying to her, in front of her was her sister, but it couldn't be. Kara wouldn't be attacking the DEO.

Lucy runs into her back at the agents abrupt stop and looks up to see the same horror Alex sees.

Supergirl is fighting a group of DEO who are trying to raid the warehouse. She is throwing people around and creating destruction.

Supergirl stops all her fighting when her eyes meet with Alex. Bullets continue to be shot at her, but they bounce off meekly. Men try and rush and hit the hero, but nothing breaks the lock the two women have.

Suddenly Kara is flying full speed at Alex. Alex has no time to move and she gets the wind knocked out of her as she smashes into a stack of boxes.

With a groan she gets to her knees, but not quickly enough as she is already being pushed against a wall by her throat.

"Kara what are you doing?"

"How do you know my name?" Her sister says as her eyes light up, Alex knows that her sister is about to use her heat vision.

"Kara, it's me, your sister."

"Shut up! How do you know my name," She pushes her head further into the wall "how do you know my sister

"Kara please," Alex says with desperation and she starts to lose her breath "I love you."

With those words Alex is dropped from the wall, and she can see her sister actually recognize her face

But the moment is quickly cut off when Kara falls to her knees screaming in pain.

Before Alex can move people come in from all around her with smoke bombs, she tries to fight it, but she quickly passes out

When she wakes up she is in the warehouse with the DEO agents, with no sign of her sister, or the people who came storming in

-Day 61:

Supergirl's mission attempt was not successful, she is currently in more simulations to distance her relationship with her sister, it seems we have underestimated just how close the two are.

The next mission will be to have Supergirl go in national city and go after civilians, we need to test her ability to be evil and test her connection with reality.

We will need to wait longer unfortunately before we attempt to go after the DEO

*Just to clarify everything:

Mon-El is at the DEO safe

Alex is getting closer to Maggie, and has an established relationship with Lucy

Lilian is not quite there with getting supergirl under her control and she may resort to other measures if she gets impatient

Kara apparently can break the control if her connection with Alex is strong enough.

Cat and Lena could team up to help Kara*