Shinji Ikari, the Third Child of NERV, recently absorbed into Eva-01, was in a black void when he saw his mother.

Shinji Ran to his mother crying.

His mother held him and told him, "Don't cry. I've never left you."

Shinji looked at her like he was about to say ask what she meant but she cut him off by saying, "My soul is what powers Eva-01. I'm trapped inside of it."

Shinji backed away crying, "THAT MONSTER IS MY MOTHER'S COFFIN!"

Yui got down and continued. "Your father betrayed me and all of humanity, son. He pushed me into this thing, knowing that it would absorb me to power itself. The same thing goes for all the other pilot's Eva's, except Rei since she's is a test tube baby made by mixing mine and Lilith DNA. "

Shinji was crying more and gasp"WHAT?!"

Yui sighed. "Your father wants the power that lies below NERV. The second Angel, Lilith. He also holds Adam, the father of the other Angels. He used this to draw the Angels who only want to save their father from NERV so that his Evangelion would be needed, but he didn't stop there. He plans on uniting and fusing with the first two Angels to absorb the souls of everyone on Earth to make himself a god, and he made you the way you are now to do it."

Shinji buried his hands in his face and cried. "I've been used by everyone, but used to bring about the end of the world?"

Yui kissed him on the head and said, "Son. You're inside Eva-01. It absorbed you, but since it only needs my soul, you will leave this place. But, I won't send you back to Gendo. I'll send you to a new world where people know how to use the A.T Field. There, you can lean what you need to stop him."

Shinji looked at her as he cried, "No! I don't want to be alone!"

Yui put a hand on his shoulder and told him, "You won't be alone. I've made sure of that."

Yui then disappeared as something that looked like the Grim Reaper appeared before Shinji and stabbed the boy in the gut, making a seal appear on his stomach making the boy black out.

Meanwhile, in another world…

Naruto was walking towards the Valley of the End, beaten and without Sasuke.

Suddenly, he saw Shinji in his plugsuit laying on the ground unconscious.

Naruto bent over and threw the boy over his shoulder. "Just because I failed doesn't mean you have to die kid. What are you doing all the way out here, anyway? and what are you wearing? "

Inside Shinji's mind...

Shinji found himself walking through a sewer, asking, "How did I get here, and where is here?"

He kept walking, looking for a way out until he came to a gigantic cage that held a mountain-sized purple fox with nine tails and glowing red eyes.

Shinji quickly fell over and screamed at the sight.

The fox looked at him. "Greetings, mortal. I am the Yin half of the great Nine Tailed Demon Fox."

Shinji backed away after hearing the word 'demon.' "If Angels were responsible for all of the evil I've seen, I don't want to see what a demon can do!"

The fox sat with his front hand-like paw's under its chin. "Boy, there is nowhere for you to go where I will not be, for this is your mind and I have been sealed within you by that overprotective mother of yours."

Shinji's eyes widened, "SAY WHAT?!"

The fox rolled his eyes. "In this world, what you know as the A.T Field is called chakra and everything you believe in your world is wrong. The only limits to what it can do is yourself, but back to the point. Here, those weakling Angels of yours never came. But, one demon did and it unleashed endless horrors onto the world until one man with the biggest balls in history discovered chakra and used it to seal the monster's soul inside himself, becoming the first Jinchūriki."

Shinji just stared at the fox and nodded for him to continue.

The fox looked at him. "A Jinchūriki protects the world by keeping a demon trapped in their own body like a living jail. Now, this man, known as the Sage of Six Paths, knew with his death that the demon would be free again, so he sealed its body inside the moon and ripped its soul into nine pieces that became the nine Tailed Beasts. None of us hold a candle to the original demon's might."

The fox took a deep breath before continuing. "Nine families became the Jinchuuriki, passing us tailed beasts from one to the other, hoping that no one would find out that they were a Jinchūriki, because most of the time Jinchūriki are treat like weapons or the demons they guard. But, one day, 13 years ago, the second Jinchūriki of the Nine Tailed Fox died in child birth, forcing her husband to reseal it with in their newborn son and, to seal a Tailed Beast, you must die. Thus, the boy was left an orphan who was treated like it was the Nine Tails."

The fox then finished." And, when you die sealing a Tailed Beast, your soul is eaten by the Shinigami along with any souls sealed within you. So, the father took me, the Yin half of the Fox, with him and I rotted with in the Shinigami's stomach until that mother of yours, wanting to keep you safe, made a deal with the Shinigami to send you here with me sealed within you to keep you safe by healing all your wounds and giving you my power when needed for you to return one day to put an end to your father's evil. And now, we are in this together, no matter how much we hate it."

Shinji's eyes where wide, but want to show some spine for once. He stood up. He was shaking, but he was up and he said, "If we're in this together, then I should know your name right?"

The fox tilted its head and told him, "Boy, it's been a long time since anyone has asked a demon for their name, so in honor of that I will grant you the honor of knowing the name my good twin and I share. It's Kurama or Ying Kurama as the case is."

Shinji was still shaking but he asked, "So, Kurama… How do I get out of here?"

Yin Kurama responded, "you leave when you wake up."

Shinji just looked down.

Meanwhile, in the outside world…

Naruto made it to the gates of the village to see Sakura who, right away, was mad about him not bringing back Sasuke and she yelled out, "I KNEW I SHOULDN'T HAVE PUT MY TRUST IN YOU, IDIOT!"

The Yang half of Kurama then said to Naruto, "Why do you care about this banshee? She hates you and even if you brought him back she wouldn't like you any better. Go ahead and ask."

Naruto not knowing why he was going to listen to the demon that made his life hell, he asked Sakura the question. "What would have happened if I did bring him back for you?"

Sakura shut up for a second before thinking that he must want to know what could have been. "Simple, dummy. It all would have went back to normal. Nothing would have changed. I would have Sasuke and you would still be the dummy pointlessly asking me out. But, I guess him not coming back is my own fault for believing in you."

Naruto made a fist and growled angrily about the demon being right but his eyes remained blue. However, now a faint, almost invisible ring formed in his eyes as he said, "I guess you're right about me being an idiot after all. I wasted way too much time chasing after you."

He then walked past her and informed told her, "Now if you please in need to get this kid I found on the way back to a doctor."

Before he could make it to the hospital, Root ANBU appeared, knocked him out and grabbed Sakura.

Within Naruto's mind…

Naruto found himself in front of the fox's cage.

"This is the end. That mad man Danzo has made his move to overthrow this village and he's going to try to remove me from you and, just to make this clear, when a demon is removed from someone, the human we leave dies. So, if he gets me, you die, just like what happened with your mother," Yang Kurama suddenly informed him.

Naruto was freaking out. "I CAN'T BE HOKAGE IF I'M DEAD…! Wait… My mother…?"

Yang Kurama rolled his eyes. " Well, since you're going to die, you might as well know. Your mother was Kushina Uzumaki, my second Jinchūriki. You see now, you Uzumaki have been protecting the world from me by sealing me within your bodies for years now. My first Jinchūriki was the wife of the first Hokage. But, back to Kushina. She was your mother. When she first found out she was pregnant, she was the happiest woman on the planet. I know. I had to put up with the joy and mood swings from within her mind for 9 months."

The demon fox shivered from the memory before continuing. "But, on the night she gave birth in a hidden location, someone found her and killed her, unleashing me. That's how I appeared out of nowhere. But, I wasn't attacking this place. I was trying to get the feeling back in my legs when you all attacked me. Then the fourth, who, believe it or not, was your father, had to seal me away into you because only an Uzumaki can contain the Nine Tailed Demon Fox and not die. But, before he was eaten by the Shinigami, he took my Yin half with me, making me nothing but Yang, or good."

Naruto looked dumbfounded, but, before the whole 'the Fourth is his father' thing sank in, he said, "If you're the good half, I don't want to see the evil half."

Yang Kurama growled. "Hey! By demonic standards, I'm a saint! If I wasn't I wouldn't point out the sealed pieces of your parents chakra left so if anything went wrong so that you could meet them. They are sealed in the wall behind you."

Naruto turned around to see a wall with the words mother and father written in kanji on it. "Ok. How the hell did I miss that?"

Yang Kurama sat with his hands under his chin. "You're always focused on me when you come here. Not what's around me. But, go ahead. Touch them. See what happens."

Naruto touched the symbols and, sure enough Kushina Uzumaki and Minato Namikaze appeared and both hugged Naruto.

Naruto was being hugged by his parents. His thoughts raced."My dad was the fourth. The third had to have known, just like granny Tsunade and the pervy sage. Did they not tell me to protect me or was it something else?"

A second almost invisible ring formed in his eyes.

Naruto cried, " could have had parents, a family and the respect of this village if one man hadn't done this."

A third almost invisible ring formed in his eye.

Suddenly, Kushina asked him, "Naruto. How's your twin sister?"

As Naruto cried, he took on a shocked expression. He asked, "Sister?"

His parents then gasped, Kushina was in tears. After all, if your son didn't know he had a twin sister, then something horrible had to have happened. No one saw the fourth almost invisible ring form in Naruto's tear filled eyes.

Yang Kurama spoke up. "You two need to know about your son's life."

He then showed the two their son's life. Both became angry and their eyes became full of tears.

Kushina's hair split, making it look like she had nine tails and she yelled at Minato "I TOLD YOU WE SHOULDN'T HAVE MADE YOUR PERVERT OF A TEACHER HIS GODFATHER! HE NEVER CAME ONCE TO TAKE CARE OF HIM! HE'S EVEN MORE OF A GOOD-FOR-NOTHING THAN EVEN I BELIEVED!"

Seeing that Kushina was angry, Kurama retreated into his cage and muttered, "Glad I'm safe in my cage… Sucks to be a Namikaze male right now…"

Meanwhile, in a room in the Root base…

Shinji was waking up in a holding cell only to look through the bars an ANBU or as he saw it, a man in a uniform, was talking to a one-armed, one-eyed man who was called Danzo ,not that he knew his name yet.

The Root ANBU spoke, "As shocking as it sounds, this boy has the yin half of the fox sealed within him, and it looks like it was just sealed in him today, Lord Danzo."

Danzo smirked. "Then I seems that luck is on our side regarding the fact that its evil was too much for the Shinigami to hold in. We shall kill him and the Namikaze brat and I shall use my implanted Sharingan to contain both halves of the beast so that I may use its complete power."

Shinji just gasped then quickly covered his mouth as the two looked his way.

Danzo eyed Shinji. "You had a Tailed Beast sealed inside of you just hours ago, yet you are already awake. Such potential… It's a shame it will have to be wasted for me to gain ultimate power."

Danzo then left.

Yin Kurama took a chance to informed Shinji "My memories from the time I was one with my good twin tell me that man is Danzo an evil man who stops at nothing to get power," .

Shinji looked down at his hands to see a band on his right arm. "Great. Another version of my father. What's this band?"

Yin Kurama "First, I can hear your thoughts, so don't reply to me aloud. People will think you're crazy. Second, it's a chakra sealing band. As long as it's on you, you can't use chakra or, as you call it in your world, the A.T field. But, there's a way around that. You see, my chakra can overload it and the pure power my demonic chakra has should be enough to get you out of here. The only problem is that I sense a drug in your system that stops you from getting angry and, without anger or rage, you can't call upon my power," Yin Kurama responded.

Shinji tucked his legs into his chest, wrapped his arms around him and replied to the fox aloud, "So I'm screwed six ways to Sunday."

Yin Kurama let out an evil chuckle and stated, "Not if you overload the drug with your emotions of this long buried memory."

Flashback…

A four year old Shinji was getting a hug from his mom.

Yui kissed him on the head before walking over to Eva-01.

"Don't worry, Shinji. Mama will be right back."

She then climbed into Eva-01 as Gendo smirked evilly. Yui never came out, and next thing Shinji knew was his father leaving home.

End flash back…

Shinji was crying as he growled, "I was there… He trapped my mother in that monster and made me watch…" The band on his arm started to crack as he growled. "Gendo…"

The Root ANBU who stood guard looked back to see the boy's eyes change to match the demon sealed within him, before morphing in to a slitted pupiled Sharigan . He ran off quickly to warn Danzo.

The demon was clearly shocked at the change in Shinji's eyes, "looks like your mother gave you a parting gift other then me! most have altered your DNA to give you those eyes, Going to be a fun time now!"

Yin Kurama then smirked kept putting the image of Gendo's evil smirk into Shinji's mind, saying, "He killed your mother for power. He used you to try to become a god. He killed your mother and put you in her coffin. He killed your mother. Took her from you when you were just a child. He killed your mother who, for who knows why, loved him. He killed your mother and ruined your life. He killed your mother and used her soul to power a manmade demon. He killed your mother, used her face on a clone to try to control you. He killed your mother. He killed your mother. Your father killed your mother. He killed your mother."

The band on Shinji's arm shattered into dust as a one tailed fox chakra shroud made of dark red chakra formed around him and he yelled out, "GENDO! I'LL KILL YOU!"

Shinji then rammed down the door by just running at it. He ran through the Root hallways with one thought on his mind. 'Must escape and kill Gendo.'

Meanwhile…

Naruto woke chained to a table to see Danzo. Right away, Naruto asked, "What happened to my sister?"

Danzo smirked. "I see Minato must have sealed a some of himself in the seal as well. Well, I don't see the harm in telling you, seeing as the chains that hold you will block all chakra within your body from being used. I kidnapped her at birth and sold her to Orochimaru. Her name was Karin."

Naruto growled. He kidnapped and sold his sister like a slave to Orochimaru.

Danzo then left, leaving only two Root guards as two more rings that could almost not be seen formed in Naruto's eyes.

Naruto growled as he thought to himself, "Danzo cost me my sister. The curse of hatred has cost me my whole family."

A sixth ring formed in his eye as he thought, 'Sasuke and my whole family are gone thanks to those stupid evil eyes…'

Naruto's eyes then changed. All six rings became as clear as day and his eyes took on a grayish color. In short, Naruto had unlocked the Rinnegan, making his half of Kurama gasp out, "My father's eyes?!"

Naruto tried to get free as he yelled, "Orochimaru! Danzo! The Uchiha! They cost me everything! I'll kill all of you!"

His guards, having no emotions, did not react or look back to see his new eyes.

Yang Kurama spoke to him. "You have the eyes of my father… From my time within my father's body, with my brothers and sisters I saw through his eyes how to use them… So, in honor of my father, I give you the knowledge of how to use your eyes."

Naruto remained still for a moment before saying, "Preta Path, Chakra Absorption."

He took Chakra from emotionless guards and, using that power, he broke his chains, freeing his own.

Naruto walked to the door and pushed his hand forwards as he stated, "Shinra Tensei." an unseen force then pushed the door to the ground as Naruto walked out to find Danzo.

Yin Kurama then said to him, "I know you're pissed and are out blood, but Danzo is a smart one. He must have your friends trapped somewhere here. Save them, then kill the old fart so he has no one to use as a human shield."

Naruto sighed. "You're right, but I can't use Shadow Clones. I haven't trained to handle seeing out of six eyes yet. I'll have to do this without shadow clones. I never thought a day like this would come…"

To be continued…