I Do Not Own Naruto or Supergirl

"Kal-El, finally!" Supergirl shouted as the man of steel himself landed on the balcony of the DEO and strode inside nodding and waving to those he passed as they stood to the side for him. "They still don't do that for me."

"What's the SOS, Kara?" Clark asked before he catches sight of the man behind the glass wearing Kryptonian armor. "I-"

Kara nods agreeing with the lack of words. "I was at a loss for words when I found out too."

She had thought after everything years ago with Zod and just recently with Non and her Aunt that the Earth would be free of any more Super powered attacks on the planet. At least from other Kryptonians.

"What does he want?" Clark asked glaring through the glass at their guest. No one outside his family had been anything but a danger to the Earth and now there was another man with their powers on the planet and if their track record was anything to go by he wasn't here for a cup of sugar.

"Commander Naruto is here for the Codex that your father combined with your cells when you were a baby on Krypton." President Marstin said as she and J'onn came out of a conference room. "He asked to meet you to ask for it."

"And if I say no?" Clark didn't like how things worked on Krypton. Having predetermined roles in society decided for you before birth wasn't how he was raised and considering that sort of system got their planet destroyed they should know better than to try and rebuild the same way.

The president shook her head. "You should talk to him before you decide anything."

"She's right," J'onn agreed. "There is an entire race at stake here. You don't want to take this lightly."

Kara's heart went out to J'onn as he said those words. She and her cousin were the last of their race just as he was the last of the Green Martians they understood each other. "Except we aren't the last anymore."

More and more Kryptonians seem to keep popping up and J'onn was still alone. "And all you've done is complain about it. Great job Danvers."

"I will hear him out," Clark said knowing his friend was right. "Bring him out."

"Maybe you should talk inside the room," Alex suggested sending a sideways glance at her sister. Kara was passionate and headstrong and while those were good qualities to have in a person she could sometimes get carried away and right now with an army of super powered beings at their door passionate and headstrong wasn't what they needed.

Clark shook his head. "If they want to stay on Earth they need to be willing to trust humanity. If this Commander Naruto can't do that than he is no better than Astra or Non."

"Very well, Agent Schott bring the Commander out," J'onn ordered and Winn for all his cowardliness only hesitated for a second before walking through the door into the conference room.

All eyes went back to the window watching with tense muscles ready to spring into action should the Commander make a move against Winn.

Their fears were unfounded as not a minute later Winn came back out with Naruto following behind the massive bulk of his armor and above average height even on Krypton letting him tower over the agent and everyone else in the room.

"Kal-El, Kara." Naruto nodded his head in greeting.

"Commander," Kara said frostily. She may have been upset with herself at complaining in front of J'onn but that didn't take away the fact that she didn't like the Commander.

Naruto heard the coldness in her voice but ignored it and focused on Kal-El. That was who he was here for. Who he needed to talk to. "I'm sure the president or the DEO has informed you of what I came to Earth for."

"They have." Clark decided he wasn't going to beat around the bush so to speak and skipped passed the false niceties. "You're here for the Codex, same as Zod."

"Zod tried to take the Codex. I'm asking for it." Naruto didn't let it show that he was bothered by being compared to the crazed ex-general who had tried to make Earth the new Krypton.

"I know and I'm glad that this meeting isn't history repeating itself. Earth hasn't had the best track record with Kryptonian visitors."

Naruto nodded again. "Astra, Non, and Zod, yes I know. I'm not here to fight Kal-El, I don't want to fight. I just need the Codex."

Kara winced at the mention of her aunt and uncle and Naruto spared her a glance but kept his attention mostly on Kal-El. He wasn't lying when he said he didn't want to fight but he would if it came down to it. He could take the chains he had to walk around in and the guns the DEO thought were hidden that were trained on him and he could take Kara Zor-EL's insults. As long as he got the Codex nothing else mattered.

"I understand, but I can't condone how children are born our Krypton. Being born with predetermined roles in society decided for you before birth isn't right. Everyone deserves to be able to choose who they want to be and what they want to do with their life." Clark saw Kara nodding along with his speech, staying silent but supporting his unspoken decision. He wouldn't give the Codex up unless Krypton changed their ways.

Kara wasn't the only one who read between the lines of Clark's speech. J'onn sighed silently as Naruto's body tensed and Alex's fingers twitched for her sidearm.

Breathing in a deep breath Naruto forced his body to relax. He didn't need another jumpy agent taking a shot at him while he had his handcuffs on.

"It doesn't matter what you condone, Kal-El. You're not the leader of the surviving Kryptonians, I am. You don't get a say in the matter. You father stole the Codex, keeping it from me, the leader of Krypton makes you a criminal same as him."

"Jor-El was a great man." Kara defended her uncle stepping forward and grabbing Naruto by the front of his armor lifting him off the ground. "I won't let someone like you talk about him like that. He wasn't a criminal."

"Supergirl!" J'onn barked and Kara let go Naruto dropping him back to the floor.

Naruto took the attack on his person in stride and didn't flinch nor did he stumble when dropped back to the ground. He stood firm as if he hadn't moved at all and Kara didn't like that. He was helpless with the handcuffs on and she had been hoping to show him that.

"Alright, why don't we all calm down," Naruto suggested while Kara set her hands on her hips and glared. It looked ridiculous but he bit his tongue and kept to the matter at hand. "I don't need the Codex to bring Krypton old laws back. You weren't old enough to remember Kal-El, but I'm sure Kara has heard all the stories about me. She should know better than to believe that I want our old way of life back."

"Then why do you need the Codex?" Clark asked confused. If Naruto wasn't trying to recreate Krypton system then why bother with the Codex at all.

Naruto held back a sigh. He would have thought the President would have debriefed Kal-El after their meeting but it looked like he would have to explain it twice.

"The Codex contains the genetic information of the entire Kryptonian race. It was used to program babies for predetermined roles in society but we need it now to keep bloodlines from reconnecting." Naruto said with a straight face. He could see the Martian nod in understanding and the Winn guy who brought him out of the room looked away red faced.

The human female agent and the president also seemed to understand but Kal-El until Kara leaned over and whispered in his ear. Naruto couldn't hear what she said, the Kryptonite handcuffs keeping his powers suppressed but the way Kal-El's face went red he assumed Kara had explained the consequences of inbreeding.

"I understand," Clark said still blushing slightly but he stuck out his hand. "I will return the Codex."

"Thank you," Naruto took the offered hand and shook it. The shake was awkward thanks to his bulky cuffs but it was the meaning of it that mattered. His race was saved.

"All we need is a vial of your blood, Kal-El. After that, we will be on our way."

"You're not staying on Earth?"

Naruto shook his head to answer Kal-El's question. "When we were drifting through space and the others were in cryo-sleep I found suitable planets for us to start anew on. I and my advisors chose a planet in the Polaris star system."

"That's great but-"

"We can talk more of this late." J'onn interrupted before Clark finish his sentence. "Kara, Agent Danvers why don't you show Superman to the lab. We can take his blood while he's here."

"Yes, sir. This way Superman." Alex motioned for the man of steel to follow her and Kara went after them reluctantly casting a final suspicious glare at Naruto.

"I would like to speak with you, Commander" J'onn slid his card through the door of the conference room and the door opened. "Without prying ears."

Naruto stepped back into the room turning to face the Director as the door closed behind them. "What can I do for you, Director?"

J'onn sighed and crossed his arms. "I want to thank you for not acting against Superman and Supergirl despite their attitudes and actions. The president and I understand your decision and want you to understand that while they reside on Earth they do not speak for humanity."

The director waved a hand at Naruto's restraints. "Those will no longer be needed either."

No matter how much he wanted to keep them on until the commander was out of his city the President had been very clear that they could keep a world leader restrained or locked in a cell while he was at the DEO. If they had tried that with a leader of another human country there would be war as no one would take that kind of disrespect.

"You are not comfortable with me being unrestrained while here. I will keep them on until my departure." Naruto said not bothering to reach for the key hidden in his chest guard. He didn't like the feeling of being weakened and surrounded by potential enemies but he would deal with. As he had everything else since he arrived at the DEO.

"You are being awfully accommodating. Not many world leaders would accept being assaulted on foreign grounds."

"The future of my people is worth more than my pride, Director. Now, if you would escort me to your laboratories I would like to ensure that future as soon as possible."

J'onn nodded opening the door to the room again so they could leave. The commander's words at matched with the thoughts at the front of his mind so he wasn't lying.

Leading the way J'onn kept an eye on the thoughts forming in their new allies mind. Just because he wasn't lying about caring about his people didn't mean he couldn't be lying about anything else. Until he leaves J'onn would keep the connected telepathically to make certain there were no ulterior motives in place.

Hope you guys are still liking the story!

I'm not sure if I'm staying true to with how the Codex actually works, but I needed a reason for Naruto to need the Codex that wasn't wanting to bring the old ways of Krypton back. Keeping inbreeding from happening was what I came up with and it's a plausible reason. Or at least I think it is. Let me know if you know what the Codex actually does but I'm pretty sure it could be used for what I said.

Anyways, Leave a review with what you guys think of the story so far and your Pairing choice.

Thanks for reading:)