Blacklight Returns

Hey guys Falling Reach here. This is the start of another Naruto/Prototype crossover. In this one, Naruto's parents Minato and Kushina are alive, Naruto has a twin sister who contains Kyuubi's power while he contains her soul, Naruto is ignored by his family in light of Naruko, and the villagers love her while they use him as the village punching bag again. This will also be a harem fic. The harem will be as follows: Yoko, Naruko, OC, OC, Anko, Hinata, and Temari. The order has nothing to do with that character's place in his heart; it only indicates when they join the harem. Let's get this story under way!

Ch 1: The Meeting and the Family Crisis

We find a six year old girl with blood red hair with blonde around the edge jumping up and down with joy because she had just perfected a very hard jutsu.

"Alright I did it! Did you see me daddy?" The girl asked a man with spiky blonde hair that had two bangs hanging on each side of his face.

"Yes I did Naruko very good!" The man said praising his daughter as a woman with blood red hair came out.

"Come on you two let's go get some ramen." She said. This got a cheer from Naruko and the family walked into the house. What they failed to notice was a blonde haired boy that was the same age as the girl that just left; he had vibrant blue eyes just like his "father", in fact one would have to be blind not to see the resemblance, the only difference was the length of his hair and the three whisker-like marks on each of his cheeks. This boy was Naruto Namikaze son of Minato Namikaze and Kushina Uzumaki, and the container of the soul of the Kyuubi no Kitsune. He hated his "family" because they always chose Naruko over him and it got to the point where the only time he ever showed his face around the house was at breakfast and at dinner. A few years ago he met Yoko and began to train under her.

Flash Back

"Dad when am I going to start my training like Naruko?" Naruto asked Minato.

"When I think you're ready Naruto now go to your room." Minato said.

"But…" Naruto started to say until Kushina interrupted him.

"Naruto quit pestering your father and go to your room." She said. Naruto didn't even try to argue at that point so he did as he was told.

"Why does Naruko get everything she asks for, but I get nothing I ask for?" Naruto asked himself once he was on his room. He decided to get some sleep so he got onto his bed and closed his eyes, but he didn't "sleep" he was pulled into his mindscape.

Naruto's Mindscape

Naruto woke up on the floor of a sewer and franticly looked around for a way out. As he walked down a path he began to hear a growling sound coming from the end of it. He entered a large chamber that had a cage door opposite the entrance with a slip of paper with the kanji for seal on it that was the source of the growling.

"So my jailor has decided to visit me? What have I done to deserve such an honor?" A voice growled.

"You're the Kyuubi! The villagers are right about me." Naruto said looking at the floor of the chamber with tears in his eyes. There was a flash of light from the cage and when it dulled Naruto saw the most beautiful woman he had ever seen standing behind the cage door. She had blood-red hair like his mother, and blood-red eyes with slits in them, her face was heart shaped. Naruto was rocketed back by a large nose bleed, and then for a second time when he noticed she was naked, which earned a giggle out of the woman.

"You're a woman?" Naruto asked when he stood up.

"Yes I am Naruto-kun. This means if the villagers were right about you, you'd also be a woman, but you're not." Kyuubi said, "My name is Yoko."

"Would you please put something on? I can see everything, but I'm not complaining about that, I just can't have a serious conversation with the most beautiful woman I've ever seen and she happens to be naked." Naruto said. Yoko blushed at the compliment and put on her kimono.

"Thank you. Now, would you please help me get stronger? I want to show my family that I don't need them." Naruto asked.

"Sure, but you should know that it won't be easy." Yoko said.

"I don't care I will do what you tell me." Naruto said. Yoko smiled and so did Naruto. When their conversation was over Naruto left his mindscape and woke up in his bed.

End Flashback

After their initial meeting Yoko took Naruto as her student and taught him everything she could. His normal training started with a few hundred push-ups, sit-ups, and crunches. Then he'd run around the village a few times. After that he'd start the real training, which was his chakra control, any jutsus Yoko could teach him, building muscle, and fujustu because he wanted to be better than both of his parents. He also found out why he'd always see familiar faces beating on him, his father was letting it happen, and he only made them pay a fine of 400 ryo then he released them. He found this out when he broke into the Hokage's office in search of the forbidden sealing scroll so he could learn the Shadow Clone Jutsu and a few other things. When he reached his "father's" office he saw the paperwork that had "civilian release requests" on the top and read it. He was, needless to say, pissed by what he read, but he decided to swallow down his anger for a later date. He did get the scroll and learn the jutsu which made his training much easier.

With Minato

Minato sat at his desk in the Hokage's office and sighed.

"When did my family become two separate groups? One of them is Naruko, Kushina-chan, and me, but the other is just Naruto. I still don't know how or when this happened." He thought. Just then, his old sensei Jiraiya jumped in through the window.

"Minato, the toads just told me a prophecy. One day the child of two of the most powerful ninja in the elemental nations will grow up to be a great hero and bring peace to our land. I think its Naruko!" He said.

"What? So what do you want to do?" Minato asked.

"I want to give her the toad summoning contract for her birthday, but I wanted to get your permission first." He said.

"I approve. You may get her to sign it, but only if she wants to." Minato said. Jiraiya nodded and jumped back out of the room leaving Minato to his thoughts.

"I know! I'll tell him that I'm going to start his training! That's sure to bring him back to the family!" He thought. With his plan firmly in his mind, he headed home. Back at the Namikaze Estate, the other parent of Naruto and Naruko noticed that Naruto wasn't really part of the family. She really had no clue how it happened, but she was determined to pull him back into their family. So she started to formulate a plan. At the Academy, Naruko was currently looking for her twin brother, but wasn't having any luck finding him. She was really worried about him, she always tried to get him to play with her, but he always gave her the same excuse, "Not now I'm too busy.", but he never said what he was too busy doing. She gave up and headed home hoping to find him already there. Back at the estate Minato was just walking in the door and was greeted by his wife who was in the kitchen.

"Minato is that you?" She asked.

"Yes Kushina it's me." He called back. She came out to greet him and he could see something was bothering her.

"What's the matter Kushina?" He asked.

"Naruto isn't part of this family." She said bluntly.

"I know he's not, but I have no clue how it happened. Do you?" He asked.

"No I don't." She responded. Then Naruko walked into the house.

"Is Naruto back yet?" She asked her parents.

"No he's not Naruko. He should be here shortly though if you're here. Why don't you go wash up for dinner, we're having ramen." Kushina said. This caused Naruko to forget her worries as she cried out in happiness. She ran off toward the bathroom to wash up. After she left the door opened one final time to reveal a badly beaten Naruto. He had a black eye, a few cuts on multiple parts of his body, and he was limping.

"Naruto what happened?" Kushina asked when she saw him.

"I fell out of a tree. I'm fine." Naruto lied.

"Well, ok, go wash up for dinner." Kushina said. He nodded and headed for the bathroom. Minato knew the truth, but he didn't bring it up to Kushina. Instead, he told her his plan to pull Naruto back into the family. (A/N: You really have to be blind to not see that all those injuries couldn't have been caused by a fall, no matter where he fell from) At dinner, Naruto looked up at his family to see that they were staring at him. He just ignored it and started to eat. As soon as he started, the rest of them did as well, which caused Naruto to scowl because he knew what they were trying to do.

"So they think that treating me like I exist is going to make up for years of neglect! Yeah right!" He thought.

"I totally agree Naruto-kun!" Yoko said. Naruto finished his food and went to put his dish in the sink and began to wash it.

"You don't have to do that Naruto, I'll do it later." Kushina said.

"Its fine mother I don't mind." Naruto said in monotone.

"So much for that!" The three other members of the Namikaze clan thought in unison. They finished not long after Naruto because the Namikaze clan loves ramen. He wanted to go straight to his room, but he was stopped by his father calling him into the living room with the excuse of a family meeting.

"I haven't been apart of this family for six years and now all of a sudden I'm a member of the clan!" He thought as he walked into the living room. Naruko and Kushina patted the spot in between them, but Naruto just stood.

"Ok Naruto the reason I called this family meeting was to inform you that your mother and I are going to start training you in our families' styles!" Minato said.

"You mean Naruto and I are going to be training together?" Naruko asked excitedly.

"That's right Naruko. So Naruto what do you think?" Minato asked.

"What do I think? I think I don't NEED your training and I don't WANT it either!" Naruto yelled, "You ignore my very existence for SIX years and you suddenly turn around and say that I'm a member of the family? I DON'T THINK SO!"

With that he stormed off toward his room leaving a balling Naruko and Kushina to a very shocked Minato.

"Doesn't Naruto like me?" Naruko asked through her tears.

"Of course he does Naruko! It's just he's been alone so long I don't think he'll easily come back to us." Minato said trying to calm his wife and daughter down. After they sat there for a while and calmed down they all went to bed, Naruko still had tears in her eyes. In the master bedroom, Kushina and Minato sat on their bed and tried to think of new ways to make Naruto feel like a member of the family.

"Calm down Kushina, their birthday is tomorrow. We'll do something then." Minato said as a plan formed in his mind. With that they went to sleep for the night. The next morning Naruto woke up at the crack of dawn as he always did and went to go do his training. It may be his birthday, but he wasn't going to slack off. He strengthened the four gravity seals he had put on himself, two on his arms and two on his legs, and went through his training routine with his extra weight, which built his muscles up even more. Back at the estate Naruko woke up and ran into her parents room. She started jumping up and down on the bed to wake her parents up.

"Mom, Dad wake up its Naruto and mine's birthday!" She said as her parents woke up.

"Alright, we're up! Now go and wake your brother up." Minato said. Naruko nodded and ran off toward her brother's room. When she arrived at the door she stopped. She had never been inside Naruto's room and she didn't want to make him angry. She knocked to see of he was awake or not. She ran down to the kitchen.

"Is Naruto up yet?" Minato asked her when she came in. She shook her head.

"I knocked, but there wasn't any answer." She said.

"Did you open the door to see if he was there?" Kushina asked. Again she shook her head.

"I'm afraid. I've never been inside Naruto's room and I don't want him to get angry with me." She said.

I'm going to cut off here after six pages! I think this is the longest first chapter I've ever done! Until next time, Peace!