Chapter 1 redo

The clock struck midnight in the village known as Konohagakure No Sato as the legendary Kyuubi no Yoko rampaged through the village. The shinobi who were above genin were all rounded up and stationed at different posts in order to stop the Kyuubi from coming any further. The streets of Konoha filled with civilians who were running amok, all screaming that they Kyuubi would kill them. The shinobi were led by the retired Sandaime Hokage, Sarutobi Hiruzen. Sarutobi was an old man who had long since past his prime, he was most known for training the Legendary Sannin. The Sannin were known as one of the most powerful shinobi in history. They consisted of Tsunade of the Senju clan, Orochimaru and Jiraya.

Many of the shinobi wondered why the Sandaime was leading them since they already had a Hokage however they were also happy, Sarutobi was one of the few that knew Hashirama and therefore knew a lot about the Kyuubi. This allowed him to minimise the amount of casualties by playing a game of hit and run, it was the only way to fight the Kyuubi since no one in Konoha had the ability to calm the enraged beast.

However the Sandaime knew one more piece of information that he didn't reveal to his subordinates. The Kyuubi was meant to be in its Jinchuriki namely one Kushina Uzumaki, wife to the newly instated Hokage; Minato Namikaze. Minato had taken Kushina and his wife Biwako to a hideout where they would tend to Kushina whilst she gave birth to two twins more specifically a boy and girl. The boy was named Naruto, he had the signature Uzumaki red hair and amethyst coloured eyes. The youngest of the twins was named Natsumi, she had her father's blond hair and ocean blue. They both had whisker marks on both of their masks, although Naruto's one were so faded that you needed to really look for it in order for you to see it.

Currently

We find the Kyuubi in front of Minato and Kushina as well the two twins, the beast was being held down by Kushina's signature chakra chains. Minato was on the ground panting, "I've set up a barrier around us." He said to his wife, "I am at my limit."

Kushina saw the Kyuubi move, several glowing chains erupted from her body. The chains encircled the kyuubi before they tightened around interlocking with each other so that it couldn't move. "What do you want to do about the Kyuubi."

"I will seal the Kyuubi in Natsumi using Hakke Fuin."

"No, seal it in me, I don't want our daughter to have such a burden on her shoulder."

"I can't seal it within Naruto since his chakra coils are more developed than Natsumi and I also can't seal it within you because you're chakra coils are heavily damaged, you can also add to the fact that your vital organs are going to start failing one at a time. You dying would only allow the beast to reform and give it a chance to destroy Konoha without me or you being alive to stop it. " Minato droned

Kushina eyes watered "But you will die and I will also die, who will take care of our children."

"I have no choice, Kushina, I am the Hokage and it is my duty to take care of this village almost as if they are my family." He saw Kushina about to retort, he said sternly "No Kushina this not up for debate."

Kushina sighed in resignation, she knew could do nothing but hope that the village wouldn't treat her children like demons however if the rumours about other demon containers than she knew her children were in for a very bad childhood.

Meanwhile Minato was running through the hand signs to summon the Shinigami however just as he was about to finish the Jutsu, a hand grabbed Minato's stopping him from completing the Jutsu. Minato turned and saw Sarutobi grabbing his hand, "Sandaime-Sama, why did you stop me."

"I am sorry Minato, I can't allow you to kill yourself and let your children suffer. I will seal the Kyuubi inside Natsumi and the rest in Kushina so its demonic energy may help her live." Minato was about to speak but he was hit in the temple by Sarutobi's staff. The last thing he heard was "I am sorry but the village needs you more than me."And with that the blond haired Hokage succumbed to the darkness.

Sarutobi turned to Kushina, he saw that her skin had gained a more yellow colour and she was coughing blood in huge quantities. His vast knowledge allowed him to identify that her liver and lungs were starting to fail, surprisingly her chains were still up but the Kyuubi didn't move instead it looked at the dyeing Uzumaki with interest.

He needed to act now or it would be too late to save the woman. He quickly ran through some hand seals, he finished the sequence by clapping his hand. "Shiki Fujin" The old man roared.

The sky darkened as a massive white ethereal figure appeared behind him, it spoke in a deep tone. "Who dare summon me, the Shinigami?"

Sarutobi shivered in fear, he bowed and said ""Shinigami-sama I am Sarutobi Hiruzen of Konohagakure no Sato and I ask that you help me seal the Yang part of the Kyuubi within the girl and the Yin part back in her mother. "

The shinigami surveyed the area and found the girl and her mother. It then looks at the boy next Natsumi. 'I sense great power coming from this boy.' The shinigami scanned the boy's chakra and genetic material. The shinigami's eyes widened in shock, 'Hmm, this boy has the potential to be equal to that women in power and with the blood of the Uzumaki, Senju, Uchiha and the Kaguya clan flowing thorough him, he has the potential to become a god in the shinobi world. I will give you gift young one, use it wisely.' He pulled out a small bluish-purple orb and put it in Naruto.

The Sandaime watched curiously as the Shinigami put a blue orb inside Naruto, he wanted to ask why but they were running out of time, he could ask the death god whilst he was stuck in his stomach after all he had an eternity. Shinigami sensed the old man's impatience and questioned Sarutobi "You do know the cost of summoning me." Sarutobi nodded "So by sealing the Kyuubi, you're soul now belongs to me." The shinigami released two elongating arms grabbing the Kyuubi before separating it and putting it within their respective hosts. Kushina fell unconscious and Natsumi became silent.

The shinigami body began fading and he grabbed on to the old man's soul before ripping out of his body. The Sandaime's eyes dulled before he fell to the ground, dead.

All of a sudden, something came out of the ground. It was something akin to a plant, a Venus flytrap to be exact. The flytrap opened revealing a humanoid figure however half of it was black and the other half was white. The white side spoke, his voice had a childish ring to it "What are we doing here, Black Zetsu."

The black side spoke "Baka, Madara-sama wants his heir, he believes Obito is too weak to do the Infinite Tsukuyomi. He also hates Obito because he's using Madara's name to make himself look strong when in reality all Obito is doing is making Madara look very weak. He told us he wants Kushina Uzumaki's son. "

The white part whined "Why do you always call me a baka."

"Because you are one, now shut up and concentrate with the task at hand." Zetsu then vanished underground before it reappeared beside Naruto; gently grabbing Naruto Zetsu disappeared back into the ground, leaving no trace of his presence.

Madara's secret hideout

Uzushiogakure

Sitting on a wooden throne was a very old man. The old man had waist-length white hair with shoulder bangs along with another that covered his right eye. The man's face was extremely wrinkled along with his hands; his body was extremely worn looking almost malnourished. He was clad in a plain black robe that covered all of his body. His lone eye were red with three spinning tomoe revealing he had the legendary sharingan, near the man's legs was a very old Kama which he seemed to use a makeshift cane.

The old man looked towards the endings of the cavern; he had stared at it every day for so long. He hadn't seen the outside in almost a decade, with the Gedo Mazo gone with Obito and his Rinnegan with little Nagato there was little he could do to fight off Hashirama cells which were overpowering him day in and day out. He estimated that he would die in a few years around 10-12, he managed to elongate his death with some seals the Uzumaki invented to increase someone's vitality and it seemed that it was also due to the fact that some of the Gedo Mazo chakra was in his body.

Zetsu appeared from the ground holding a young baby. Black Zetsu spoke "I have brought the child of Kushina Uzumaki as you asked, his name is Uzumaki Naruto but I still don't know why you didn't pick an Uchiha."

Madara answered, his voice strained"I never said that he wasn't an Uchiha, have yiu ever wonder how I managed to get a secret base in Uzushiogakure, how many villages want their seals even after their destruction but as you know they Uzumaki used the remained of their chakra to activate an impenetrable barrier that killed all of their enemies within and blocking out the others outside of Uzu."

Zetsu nodded "Yes, even I couldn't get through Uzu's barrier, Obito wanted to know their secrets but neither of us can get through till you gave me acsess to this part of the island but I can't go anywhere else within the island apart from this zone without me dying. "

Madara chuckled which sounded like a wheezing cough, "The reason is simple Kushina Uzumaki is my daughter." Both Black and white Zetsu's eyes widened, they were known as the world's best spies and black Zetsu seemed to know every historical event so it hurt his reputation to not know about this.

"You see during the end of the second shinobi war, I resurfaced going from village to village. Eventually I came across a group of Iwa Nin who were fighting an Uzumaki women, the women looked like she already came from another battle but before she could head back to the port that led to Uzu she was ambushed by two battalions of Iwa nin. She managed to defeat an entire battalion in her weakened state but the Iwa nin cheated by injecting her with a poison that is specifically made to target the Uzumaki physiology causing them extreme chakra exhaustion, muscle spasms and weakness and nerve problems. I decided to intervene and killed them all with just my weapons. I took her to one of my secret hiding places in Kiri. I spent months healing her until she was well enough to speak. She asked my name and I asked the women her name which was Hitomi Uzumaki. She was afraid of me at first but we eventually we become closer and closer. I felt myself falling in love with this woman whom I just met. It took us an entire year along with several medical surgeries to fully heal the women. Once she was healed she asked for me to come with her to Uzushiogakure, I agreed so using a special henge I managed to change my appearance so that no one would know that I am Uchiha Madara."

Madara took a quick break before he continued his long speech. "We then spent the next few years together before I proposed and then we eventually had a child. I was so happy it was the first time I let go of my hatred and enjoyed my life but when the third great shinobi war started, disaster stuck. First the Hokage and Mito wanted our child since she had special chakra chains that could control a bijuu. Hitomi argued but it was the deal that the Senju signed with the first clan leader. I grew angry at the fact that the Senju when they had dwindled to only a handful know where still destroying with my life. Hitomi sealed of Kushina's Uchiha blood making sure she would never activate the Sharingan. The Konoha shinobi arrived and took our daughter, I was so tempted to kill them and take Kushina away bur I knew that would lead to Konoha waging war on Uzu. However everything turned from bad to worse, Uzu was invaded from all three sides, Iwa, Kumo and Kiri all attacked at once. The barrier around the island should have held up but it seemed Konoha had betrayed us by implanting some of their ANBU to fit in with the minor clans on the island. Once the barrier was down the Island was flooded with shinobi from the three village's genocide. My wife and I got separated during the battle and before I could reach her I saw the Sandaime Mizukage kill her. My sharingan evolved to the rinnegan and I killed the Sandaime Mizukage. After the death of my wife and the kidnapping of my daughter, I grew in hatred and I decided to complete infinite Tsukuyomi. The reason I can enter Uzu is because I am one of the few non Uzumaki who have learnt Fuinjutsu from the worlds most powerful seals man."

Black Zetsu was surprised that the old man could hide this much from him, he thought 'This could interrupt my plan to bring mother back.' He said "So this boy is your heir that will carry out the Infinite Tsukuyomi."

Madara smiled "Hai, he is an Uzumaki and Uchiha as well as a Senju from his father. I will not force him to carry out the Infinite Tsukuyomi like I did with Obito instead I will help train him to be a legendary ninja like me and let him kill Obito."

White Zetsu spoke childishly "So he has the potential to be as strong as Rikudo Sennin."

"Oh, I plan to make him surpass the dead hermit. After all he does have the blood of the two sons of Rikudo Sennin flowing through him unlike me; he has their power through natural means. I can sense his chakra even at birth is already equal to that of a high genin."

Black Zetsu narrowed his eyes at Madara; he thought 'what would mother do in this situation.' For once in his life he was clueless as what do, he knew he could manipulate Madara but the young child, there something very off about him, something that told him to run as fast and far as he could. Black Zetsu then spoke after a moment of thinking "So what shall we do now."

Madara looked at Zetsu whilst holding Naruto; he smiled it reminded of holding a baby Kushina again but his eyes hardened. "I want you send a Zetsu clone to do get some groceries for the baby. You should go back to Obito before he becomes too suspicious that I am still alive, I will train Naruto when he reaches Age 4."

The Next day (Morning)

Konoha

Minato walked up to Kushina room, his face stained with dry tears. He remembered what the nurse had told him last night.

Flashback

A few hours after Kyuubi attack

Minato had just woken up, gasping he looked around the room and saw that he was in a hospital. He heard a wail behind him and he found his baby daughter sleeping peacefully in a cot. His eyes widened in horror where he couldn't see his son or his wife for that matter. He shouted for the nurse and she appeared a few second later.

He demanded "Where are my son and my wife."

The nurse had a sad look"Kushina-Sama is going to be Okay, she just came out of surgery and should wake by tomorrow." Minato sighed in relief as the sinking feeling in his stomach had disappeared. "But I am very sorry; It appears that your son has been kidnapped."

"My son, he was just born and someone stole him from me." He tried to stand up only to fall down on his knees as sweat dripped from his forehead.

The nurse rushed to help the Hokage up, she said "You must rest, Hokage-Sama, ypur suffering from chakra exhaustion and a minor concussion."

Minato furiously shouted "No, My son was taken from me and you expect me to be able to rest."

"I know, I am not a shinobi but a few hours have passed since Kyuubi's attack meaning that the person who stole your son could be already in Kiri or wherever he was heading."

Minato sighed "You're right; I am sorry Nurse-san from shouting at you."

The young nurse shook her head "It isn't your fault, you're son just got kidnapped but you should rest any chakra usage right now could lead to severe exhaustion and put you in a coma or kill you."

Minato smiled before he gently sat back on his bed, he watched as the nurse left. He decided to tell Kushina in the morning but not before shedding a few tears.

Kushina looked up and saw her husband tearful eyes, she knew something was going on. "What's wrong Minato-kun?" A worried Kushina said.

"Kushina, I am very sorry I couldn't tell you this earlier but you just came out of surgery. The nurse just told me Naruto has been kidnapped when we were unconscious." He looked down with a saddened face

Kushina eyes widened in shock and her hand fly to her mouth as tears started to flow down her cheeks, she spoke whispered "First Uzushiogakure being destroyed and my parents being killed during the invasion and then Sandaime dies by sealing the Kyuubi and in me and my daughter and now my son is captured." Minato saw his emotionally distraught wife; he hugged at which she stiffened before crying in his chest

'He thought 'This week has to be the worst one in my entire life. Naruto, I swear I will find you and bring yoyu back home. As soon as I am discharged I will put Jiraya-sensei's spy network on high alert but there is something weird about this why take Naruto when you could take Natsumi who has superior chakra reserves since she is a jinchuriki. Hmm I wonder what makes Naruto more special.'

Minato thoughts then went to Natsumi and what he will have to tell the council.'The civilians are going to raise hell for this and demand Natsumi's death' he thought as he looked outside the window and saw the sun rise. Sarutobi sacrificed himself for him to make Konoha strong and he swore he will just do that. It was going to be the dawn of a new age for Konoha.

I changed some of the plot so instead of Kisame training naruto it will be just Madara. Naruto will be the same strength as before but I am reediting chapter 2 as well. I am sorry for not updating in a long time, I lost my motivation but now I have regained it. This story will contain Naruto also having the Kaguya bloodline as well as EMS , Mokuton and Rinnegan. He also has Hogyoko but he won't activate until very late into the story. I might add Naruto sub elements but if I do he will learn them at a realistic pace and not just invent jutsu just after learning that specific sub element.

I want to ask what bloodline I should give his sister. Here are the choices;

Chakra chains

One sub element like storm, ice or anything apart from wood.

Kaguya bloodline

No sharingan or rinnegan please

Harem so far

Mei

Anko

Fem Kyuubi

Fem Haku

Kurenai

Please add more, poll will soon be up.