So some big dick energy reviewer saved this fic
So for everyone that liked this story give a big thanks to Kalvernus
He/she has saved this story by figuring out how i could actually do it in a fun way. That being removing all the crossover elements other than Prototype, Saints Row, and one more. That third one being Marvel Comics... however I am also tempted to DC. This idea will help make the fic a bit more manageable in terms of cohesiveness.
This new version of the story won't be coming out any time soon sadly, but now there is hope.